blast algorithm Search Results


90
Paracel BLAST blastn and blastx algorithms
Workflow of the sequences analysis, from raw data to assignment.
Blastn And Blastx Algorithms, supplied by Paracel BLAST, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Gallus BioPharmaceuticals primer blast algorithm
Workflow of the sequences analysis, from raw data to assignment.
Primer Blast Algorithm, supplied by Gallus BioPharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Incyte corporation algorithms and programs based on blast, dynamic programming, and dinucleotide nearest neighbor analysis
Workflow of the sequences analysis, from raw data to assignment.
Algorithms And Programs Based On Blast, Dynamic Programming, And Dinucleotide Nearest Neighbor Analysis, supplied by Incyte corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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SourceForge net blast based algorithm
Workflow of the sequences analysis, from raw data to assignment.
Blast Based Algorithm, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Timelogic blast algorithm
Workflow of the sequences analysis, from raw data to assignment.
Blast Algorithm, supplied by Timelogic, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Advanced Biocomputing wu-blast 2.0 algorithm
Workflow of the sequences analysis, from raw data to assignment.
Wu Blast 2.0 Algorithm, supplied by Advanced Biocomputing, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Paracel BLAST cap4 algorithm
Workflow of the sequences analysis, from raw data to assignment.
Cap4 Algorithm, supplied by Paracel BLAST, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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World Fusion Co Ltd basic local alignment search tool (blast algorithm
Workflow of the sequences analysis, from raw data to assignment.
Basic Local Alignment Search Tool (Blast Algorithm, supplied by World Fusion Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Metagenom Bio Inc basic local alignment search tool (blast algorithm) for bacterial 16s
Workflow of the sequences analysis, from raw data to assignment.
Basic Local Alignment Search Tool (Blast Algorithm) For Bacterial 16s, supplied by Metagenom Bio Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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AgResearch blast algorithm
Workflow of the sequences analysis, from raw data to assignment.
Blast Algorithm, supplied by AgResearch, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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SourceForge net blast algorithm-based search version 2.2.23
Workflow of the sequences analysis, from raw data to assignment.
Blast Algorithm Based Search Version 2.2.23, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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86
Biotechnology Information ncbi blast suite version 2 16 0 c hepaticus
Expression and confirmation of the surface display of C. <t>hepaticus</t> mimotopes as a fusion with OmpC in E. coli DH5α Δ ompC and APEC PSUO78 Δ aroA Δ asd double mutant strains. ( A ) Coomassie brilliant blue–stained gel picture showing the outer membrane proteins extracted from the recombinant E. coli DH5α Δ ompC strains. The arrow indicates the position of OmpC (30 KDa). ( B ) Western blot image showing the recombinant His-tagged OmpC protein extracted from the E. coli DH5α Δ ompC strain. The arrow indicates the 48 kDa OmpC + mimotope fusion (lanes 4 and 5 in ( A )). ( C ) The western blot showing the recombinant outer membrane protein fractions extracted from APEC PSUO78 Δ aroA Δ asd carrying three different mimotopes. The arrow indicates the 48 kDa OmpC+ mimotope.
Ncbi Blast Suite Version 2 16 0 C Hepaticus, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Workflow of the sequences analysis, from raw data to assignment.

Journal: PLoS ONE

Article Title: Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing

doi: 10.1371/journal.pone.0038499

Figure Lengend Snippet: Workflow of the sequences analysis, from raw data to assignment.

Article Snippet: The aforementioned databases were scanned using the BlastN and BlastX algorithms provided by Paracel Blast (Striking Development), a software capable of executing searches on multiple non-shared-memory processors simultaneously.

Techniques: Sequencing

Expression and confirmation of the surface display of C. hepaticus mimotopes as a fusion with OmpC in E. coli DH5α Δ ompC and APEC PSUO78 Δ aroA Δ asd double mutant strains. ( A ) Coomassie brilliant blue–stained gel picture showing the outer membrane proteins extracted from the recombinant E. coli DH5α Δ ompC strains. The arrow indicates the position of OmpC (30 KDa). ( B ) Western blot image showing the recombinant His-tagged OmpC protein extracted from the E. coli DH5α Δ ompC strain. The arrow indicates the 48 kDa OmpC + mimotope fusion (lanes 4 and 5 in ( A )). ( C ) The western blot showing the recombinant outer membrane protein fractions extracted from APEC PSUO78 Δ aroA Δ asd carrying three different mimotopes. The arrow indicates the 48 kDa OmpC+ mimotope.

Journal: Vaccines

Article Title: Identification and Expression of Immunogenic Mimotopes of C. hepaticus Using an E. coli -Based Surface Display System

doi: 10.3390/vaccines14040298

Figure Lengend Snippet: Expression and confirmation of the surface display of C. hepaticus mimotopes as a fusion with OmpC in E. coli DH5α Δ ompC and APEC PSUO78 Δ aroA Δ asd double mutant strains. ( A ) Coomassie brilliant blue–stained gel picture showing the outer membrane proteins extracted from the recombinant E. coli DH5α Δ ompC strains. The arrow indicates the position of OmpC (30 KDa). ( B ) Western blot image showing the recombinant His-tagged OmpC protein extracted from the E. coli DH5α Δ ompC strain. The arrow indicates the 48 kDa OmpC + mimotope fusion (lanes 4 and 5 in ( A )). ( C ) The western blot showing the recombinant outer membrane protein fractions extracted from APEC PSUO78 Δ aroA Δ asd carrying three different mimotopes. The arrow indicates the 48 kDa OmpC+ mimotope.

Article Snippet: Furthermore, the peptides were searched via BLASTP and PHI-BLAST against the National Center for Biotechnology Information (NCBI BLAST+ suite, version 2.16.0) C. hepaticus -encoded open reading frame (ORF) database to identify highly similar proteins, which were then subjected to subcellular localization prediction for further selection.

Techniques: Expressing, Mutagenesis, Staining, Membrane, Recombinant, Western Blot

Comparison of C. hepaticus loads in liver and cecal samples across the experimental groups by quantitative real-time PCR. Group-4 (Mimotope-2, FliK), group-6 (mimotope-4, flagellin A), group-7 (mimotope-5, MOMP), and the control group (positive control: unvaccinated-challenged control group). ns: p > 0.05 (not significant), and **: p ≤ 0.01 (moderately/highly significant).

Journal: Vaccines

Article Title: Identification and Expression of Immunogenic Mimotopes of C. hepaticus Using an E. coli -Based Surface Display System

doi: 10.3390/vaccines14040298

Figure Lengend Snippet: Comparison of C. hepaticus loads in liver and cecal samples across the experimental groups by quantitative real-time PCR. Group-4 (Mimotope-2, FliK), group-6 (mimotope-4, flagellin A), group-7 (mimotope-5, MOMP), and the control group (positive control: unvaccinated-challenged control group). ns: p > 0.05 (not significant), and **: p ≤ 0.01 (moderately/highly significant).

Article Snippet: Furthermore, the peptides were searched via BLASTP and PHI-BLAST against the National Center for Biotechnology Information (NCBI BLAST+ suite, version 2.16.0) C. hepaticus -encoded open reading frame (ORF) database to identify highly similar proteins, which were then subjected to subcellular localization prediction for further selection.

Techniques: Comparison, Real-time Polymerase Chain Reaction, Control, Positive Control